NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207906_1035172

Scaffold Ga0207906_1035172


Overview

Basic Information
Taxon OID3300025052 Open in IMG/M
Scaffold IDGa0207906_1035172 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-37 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)685
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003270Metagenome496Y
F024325Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0207906_10351721F024325GGAGMSGSWDLATATSLGTGVAKTQINGGNNLTKPTQAVNLVEVVPYTVSSGVYTAGESIALTAYLDSFSVDLLPKRII
Ga0207906_10351722F003270N/ALNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPGGQPRINPAGIINKWVGIGVAGKLYGKIGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNNGGRVSTANVTPNVMLQNRSQTNRSFAVAQRNRGFVPVDSFDYSTGSAFR
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Institute for Fundamental Biomedical Research
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