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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025057 Open in IMG/M |
| Scaffold ID | Ga0208018_100064 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 47546 |
| Total Scaffold Genes | 58 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (17.24%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 28.867 | Long. (o) | -90.467 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003038 | Metagenome / Metatranscriptome | 511 | Y |
| F004953 | Metagenome / Metatranscriptome | 417 | Y |
| F025977 | Metagenome / Metatranscriptome | 199 | Y |
| F048942 | Metagenome / Metatranscriptome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208018_10006434 | F048942 | N/A | MIKVKELKDDAILDIKVNKSFYLMAKAASFTILQNMKIEDKGDEYFKQIMNEKYENLDNSQRSFYTIILLLAEIEKQATENNLFIEREIPEPGDEGYVEPTVQEDSTEDSN |
| Ga0208018_10006436 | F025977 | GAG | MTEIFNLLIEKELTPNSFYVLYCIKEKIVPNKLVNKNLETQRLINQNWLTENLQLTDKSLIFITKIDGYFKKSKKKTSKDLMGDNFMQKIDAYVKLFPNKKLSSGKYARVPAKSLEGSFRWFFENYDYDWQTIFAATQKYINEYETKNYDYMRTSRYFLRKQNLDKSWDSDLATYCEFLNDTPDVDENPFEELIV |
| Ga0208018_10006440 | F003038 | N/A | MALSTEGLSAGGGSGLPKTISPGNNILKINSVTLDPFKFIDNAYHLMLHVETKPIDGFEGFSIDRDNPDAGHYKGQIGRVKASQYAFADGETKSGIKIQRDRSILIFLQNLCNTLGINDWMTAQHNQHETVEDFVKAFNDEAPFKDKYLEYCVAGKEYVGKTGYTNYDMWLPKADKGKYAYGEIEGGKVIIYDEAKHLKKLENKNVESFGNDDFSKTTSNDFSLD |
| Ga0208018_10006452 | F004953 | GAG | MLIVQTTWQEDQTFRMIPIEESCPYVECIYDPSTNVFVVISKIKKVSLHMLPQLDDYGQPITSAKGAKQARHKLEVFQEFYIESEDSIHELVELFGNNSDTFDYKKFMKKKDK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |