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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025057 Open in IMG/M |
| Scaffold ID | Ga0208018_100534 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9654 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (63.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 28.867 | Long. (o) | -90.467 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009527 | Metagenome / Metatranscriptome | 316 | Y |
| F060926 | Metagenome / Metatranscriptome | 132 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208018_1005341 | F060926 | AGG | MSWQKQVSTIAVAIAVLSGIFMALNIGLGEALQVVVDPNDPSNPLDANTTAVFGGQVDFVDRIAVLGVFTTILGTAGLGILSTSSNNPPFINTLIRYMPVIVGLVAFTAFSTEVFEIIQGDRVWANYDDATNSYMLFLASSMVAGLVSLLKR |
| Ga0208018_10053415 | F009527 | GGAGG | MKNRFPPSIVNLILKEGQRFEVNGQFKTALGTGIIPIVASARGGKTSLAYALIDYAIEYTNRPIILDSFPQKVIDEGIPEHWKGRVSNESFNDIAKIDEPAIWLLDDSATHFNSRSAMTSTNQTLAKSAGVLSHFGGGMTVIFTTQSMSGIDLSLLRYTTISPIIRWVDKDLIPQERKEWKGEIQYGQYQLSKVCKDERFRDFFWSAKDKVLVKSNYPKFLEEEKDPLKKDLMSRPMRYHTVQEKEILLGIVKPPRKKTAKRKVQEDES |
| Ga0208018_10053422 | F060926 | N/A | TIAVAIAVLSGIFMALNIGLGEALQVVVDPNDPSNPLDANTTAVFGGQVDFVDRIAVLGVFTTILGTAGLGILSTSSNNPPFINTLIRYMPVIVGLVAFTAFSTEVFEIIQGDRVWANYDDATNSYMLFLASSMVAGLVSLLKRN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |