NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208018_100704

Scaffold Ga0208018_100704


Overview

Basic Information
Taxon OID3300025057 Open in IMG/M
Scaffold IDGa0208018_100704 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7743
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (11.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameGulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010834Metagenome / Metatranscriptome298Y
F019312Metagenome / Metatranscriptome230N
F031655Metagenome / Metatranscriptome182Y
F039095Metagenome164N
F046627Metagenome151N

Sequences

Protein IDFamilyRBSSequence
Ga0208018_10070412F031655N/AMNFALDIAPLAGFLIGVNYWNSNFDEDYENPKYHSLQLCFGIFALVMTWATEE
Ga0208018_10070414F039095N/AMENTTPDEYRWVRGGSKSLALLWLRQKNHDLMNIAQALKPQDTSNGYEMDIFIDLISIYGAMTTAIEMVEDVQQMVWEAEAKNADLKLTIQHLAKKVKTYEDRFDNLNEHLK
Ga0208018_10070417F010834N/AMTNTVELLLKLPKTISLNTLYAGKHWTYRKKIKDGYKKIVEVALADYDHYSAKSCTIYIRYNTRADVDNNVLVSKFVADTLVANGWIPDDSPKYYNKLTIAFDGAVEKNYCEVRVTLVDCVLTNAED
Ga0208018_1007045F019312N/AMNHTEAILKAQIVFEQPLTDKETIDQLLHIDAQMYANTGVDTSKAEMESVKRASAFIYRLIKGIDYDKGQRLIQAMGLTR
Ga0208018_1007048F046627N/AMSFVKGDIGESLWCTHLEKKGHYNITTAPKKKFYDWDVRSEHSNRHYTFEVKYDEKAYWWAAKRGTPENPNLYIEFKNTNKDEDSGIRASKALYYVYMLVRDDSVTAYLFERKGLLNHLEQVTYKVVGNSATGDDNALGWIPPLHQLVSQPFFINKIML
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Institute for Fundamental Biomedical Research
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