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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025057 Open in IMG/M |
| Scaffold ID | Ga0208018_101136 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5696 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gulf of Mexico | |||||||
| Coordinates | Lat. (o) | 28.867 | Long. (o) | -90.467 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001190 | Metagenome / Metatranscriptome | 753 | Y |
| F043888 | Metagenome | 155 | Y |
| F067679 | Metagenome / Metatranscriptome | 125 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208018_1011361 | F067679 | GGAGG | VISPAQKQKAQSFLGQAYQDVLGGIGNLFPEKVKQGFQAGVDIMSPQARSELRDEKGNRVLSSIANYSTVSPGFKKELAKVKGITLREKPQEFLGAYAARLLTDVGTDSTRHIYWRYNHPMAIADAIIEKAAGPVYQELNPTQKAAVRLTIGAPAVSSLGVFDITNPGELFRPKGFAQSYAEQGSEDRRETGQPGLELVERIFLGRQGRPLKYETAKEDIPSLTPERYSRYMKNYYQDKGVTGLGLVKFTPENLQGEPEARIVGFPIGLQSIGAVAGGATALRGALKSQPPVITEMKGTQEIKRRVPGATRRAAGITLAGSLAGTLAGNLTNKAIASLNNNPERLPDTLEYQPGM |
| Ga0208018_1011365 | F043888 | AGGAGG | MGGGGTRVEYKSPQIPKDDSFEKYLQYQQQRESIAEQRAAQEKAEAAAKEEARKAAGQAGFAGLRSGVESQLRQGLISYTDATGQLRDYAARYDLTPPETDVAGLTELYTKELLPGRRATGVEAAYEELLGRSATEEEKSKALERFNQGYYSTVQDLKDSLVKGSEYQDKFNQSYLDNYYDTMFGKQTLTAEGKKSGQRTFNFDANLLPSYAEATKARAGVVTPDFKSQFTGTPAEIEEQLQNVRDTRKYLYSAGLTNLQGEIDKETQKLKNEGSREVARITKEGDIYSQLVGAFNFS |
| Ga0208018_1011366 | F001190 | GGA | MTSTPVGQGTSDDYFDINKFEQLLERLEGSKGRQQRQKSLEGRRDIYAQGLASMMSNF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |