Scaffold Ga0208300_111281

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208300_111281

Scaffold Ga0208300_111281

Overview

Basic Information
Taxon OID	3300025061 Open in IMG/M
Scaffold ID	Ga0208300_111281 Open in IMG/M
Source Dataset Name	Marine viral communities from Cariaco Basin, Caribbean Sea - 23_WHOI_OMZ (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1327
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Caribbean Sea: Cariaco Basin
Coordinates	Lat. (^o)	10.847	Long. (^o)	-65.114	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054162	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208300_1112812	F054162	N/A	MKNLLITKQEFLQRAKAINVKQSRGHDAPSYEWDIKFDNVKVCNCWDDSYGGELDISNYKGQSIESIYNKIDKKSLWDKEYKWTTSLELLMYELKNIAIMKKDEKKGVMIGEPNFYDIVGYKTSIPTTFKKWNDAKESVQLSYQKIIDDAIKEGKNILNKEYLGTWGLNV

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