NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208012_1004606

Scaffold Ga0208012_1004606


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1004606 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2870
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012401Metagenome / Metatranscriptome281Y
F012463Metagenome280Y
F027156Metagenome195Y
F029745Metagenome187Y
F040056Metagenome / Metatranscriptome162Y
F048570Metagenome148Y
F077179Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0208012_100460610F040056GGAGGVQTQADFRIGTLLRWNAGNTGETDDIDELGIVIQMPGETAYYYIAWSTTNTVSHHSPDMVEESLYQRQMEIVG
Ga0208012_100460611F029745GAGGVASKAPRVGDVVKSRVTTESVAGFIVSTEGIHVWVRFFDTALEGESWDVYTRRDTLEVLSRANAS
Ga0208012_100460612F077179GGAGGVKPNDYKPGDLILFFSGNSRFYEGPEEIGWIVRRDYDDPSEPAVMVAFPEPNKNGLLHYYDVELREWEKGGIIEVKRG
Ga0208012_10046062F012401GAGVCYSILTMNEQPSEDERMIDGILSLEKAALEKLTEDRIASGSLGEEVEDLLSEAGIYWDTLNSEYFSIDNFQRETFERLAKEYASQDYA
Ga0208012_10046064F012463GGTGGMKIGDIVKLIAKPQVDWMLNYLDKTFQVLDFPTETGVEVMMVGSRPEWVWVIGKDNLEVSDEAGGHRGDSAES
Ga0208012_10046067F048570GGAGGVKIGDLVRCRPRDPGENYDEWLGLIIGESYSGQHTVQWVCSDGRGDVEEVNHTPQELEVISENR
Ga0208012_10046069F027156GGAGMMPKVGQLLRWYDNFTFDDDGPHHDVGIVKEVQLAGVNFFDHDAYEYVVVVDWCKGPHHSLHDQEEWEESIRTNEIVVV
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