Scaffold Ga0208012_1005678

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208012_1005678

Scaffold Ga0208012_1005678

Overview

Basic Information
Taxon OID	3300025066 Open in IMG/M
Scaffold ID	Ga0208012_1005678 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2479
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	100
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F036926	Metagenome	169	Y
F085572	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208012_10056782	F036926	GAGG	MSLSSEKVEEVVSDLLQNLPEHVSISDMRNLVCELLFGLGLHPDDLPIFLLTVVDAYMGDRRVDMLRE
Ga0208012_10056783	F085572	AGGAGG	MDDRVYVVRDEVCRLQREVDDAEWEGDPRLSHLAWELAQFKKLEEEGVIYEPKF

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