NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000130

Scaffold Ga0208667_1000130


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000130 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34445
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (91.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010503Metagenome303Y
F092739Metagenome107N
F096072Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100013021F010503AGGAGMGTKIDHDKLYKIQTYSFHDAVITVTESLYSRTEIDPPTKPNKWGHTPSPTVHADGSEHYYKYNHWEEAIAVVPLHFDYSDNLTEADKIKVVLETVDALQKAYASYPDGEISISWTMRRACINE
Ga0208667_100013035F096072AGGAGMFMIYQRPMSTAQVDAVNRHPESSFAKAYMGLLFPSPDNAQERVTAALNLGLYQRTMLISATDGGSVTLEQVFNAGNNHIGEGVNVVSMGNHPSMSVGDIAVSLLDDDVYLCMPHGWHVLDMELSLEPANPKCY
Ga0208667_100013038F092739AGGAGMTNNTATATVTGTFTFNGTQFTQAQAVAHGEAVFDTLCLQAESMLDGYNELGSIFLGIRSLHKSDQIFHTEIMKTGLGNVDRRDRNDMMVIASNFPAILRLRKRDDWKVDLKNSAIVKRFRNENKKAKNEGKAASAGNVSKGKGKAKSAAAADGPSVTENHPFAEAMTEAELAAYVLDMIAVHGLDKDTFAKELRSQNKGKA
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