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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025070 Open in IMG/M |
| Scaffold ID | Ga0208667_1000133 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34025 |
| Total Scaffold Genes | 45 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (86.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F049233 | Metagenome / Metatranscriptome | 147 | N |
| F059362 | Metagenome / Metatranscriptome | 134 | Y |
| F059372 | Metagenome / Metatranscriptome | 134 | Y |
| F080496 | Metagenome / Metatranscriptome | 115 | N |
| F090865 | Metagenome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208667_10001333 | F080496 | AGGAG | METWEKDLNENMESIRNSYESIMKTGYSIMGVMILWIGIEIGMLL |
| Ga0208667_10001334 | F059362 | AGGA | MIKTGDPFLVDDKTRLRRTADIEGNIGKIIRVGTMNDTEFDYDIGSLISINDVSLVIRSLIDGDIKAYDLNCTNSGLYKGTITV |
| Ga0208667_100013343 | F059372 | AGGA | MSDEEIQGFIDYFGEDNIPNPDHYPQRVMWLMKWYRYIVERNRRQNEKDEVKDYTGQ |
| Ga0208667_10001335 | F049233 | AGGA | VIKITEKKVLGDIGEKIVGNYMSRIGRTVEMSTDPFDSEKDMIVNGKSLEVKTQVPFCLDKSFTIKRNQLNKCLNADYFVIVQAPCQYLNESAIWKVKKGFTYNTVKLKGGGERIAIPMNQPNVIKKMDIVGEDKELLRKYSTDFGG |
| Ga0208667_10001339 | F090865 | GGAG | MNKIHIFSSPRSGTHYLESLISKTLDVPVVPTPFEERKAFNIDTKELSNQINEFNSTDSLVCKTHPNWLFPYDTSVEQFKYLREPDSDMLPLIRRFTDTIDYTIGVIRLNIVDVSLSFALAYHNFRLTGDGTGSFRPPYDNKTVTIPMEDFVENCNKILAIYELMIAQEEIKCDKIIYYEDLAFDSTDGIFFGERSHDIESSIKQAKSKKITIANYDELYEYAVKFYSTHQWSMKINEGVITEMDLSNLKKSR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |