Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1000254 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1000254 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24808
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (82.50%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

24808

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (82.50%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F001942	Metagenome / Metatranscriptome	613	Y
F002221	Metagenome	581	Y
F005495	Metagenome / Metatranscriptome	399	Y
F006845	Metagenome / Metatranscriptome	363	Y
F007417	Metagenome	351	Y
F008281	Metagenome	336	Y
F008346	Metagenome	335	Y
F008595	Metagenome / Metatranscriptome	331	Y
F012117	Metagenome / Metatranscriptome	283	N
F028655	Metagenome / Metatranscriptome	191	N
F034894	Metagenome	173	N
F067646	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100025416	F008595	AGGAG	MSKEENKMENQEPVIITFNGTEYRAADLNEDQMALAAKLNIAGKKLARLQEYYDDYVITDEYKNLCIQSFDRAINATNEEAEVEDQEEK
Ga0208667_10002542	F005495	N/A	MLKWNGGSNTPNLNMKKYKILTDTMAGGSKVHAGDIVELHEHEGHALCGYGKAEVHTAKPKAKKEDRSVGLETSKVKAPKTRAKK
Ga0208667_100025420	F001942	N/A	VPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFVFAAENSRSQSETYKHYTCDILAFVFFDGEDKRIMFKANTSSQNYFTFDKKVITESMELDSLKETLDNLSSVPVLNPLI
Ga0208667_100025422	F007417	AGGAG	MTRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIAQGHKVKLTKEKK
Ga0208667_100025423	F008281	AGGAG	MNLMCNTKHGAIEWRWKDTGQPSPEYKSLNHQWWIPKKSEFELVTKVDASIKQELKDEIWEDMQSDFEYQKSIYKLHKLNKKEKK
Ga0208667_100025425	F034894	AGGA	MNVTFNLLGGGELNIPPRAISGFYKDQFTSEVIVEVGEDEYKVRDSLDEVKYILGLAR
Ga0208667_100025429	F067646	AGGA	MLEWILYFIAGIFGLVFIGGLISVLAFIYMINELD
Ga0208667_10002543	F001582	GAG	MPLESALDFNAYVDTTTGHGVTATFFEVQSSLWDARQGLIDTWFDIDSGDAYSINIIIDQEYFNIEGGTVPVAGYQPRAIVKASDVPYISQEDRLIVDAITTDKGNVLKSETTFLVKTVEPDNTGLVSLVLEEQ
Ga0208667_100025431	F006845	AGG	MDLNSYLLEQDFEDYCRFAYEKIQSACEFLGIINDEDFESFKERCYTQLEADYLNSIEKTIH
Ga0208667_100025432	F012117	AGGAG	MDILGGMSSSNSESQQVYLAFKTMQQKFFANGETPLDFQYLQLDPASFKSGWGRYTKAEGFEYHWDDKFGVVSSKPAEDFKRAFSAWVFPQGAQHAYLWQRFTYAETSAFNSLLATFWNQMDTSSDSLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSPEFVIPSWYTDQEAPVEDTFKSPNDGLSDKVAEMVSQNELTDDDIPF
Ga0208667_100025434	F002221	GGA	MKTYLDETLEDKLKELRVYELETFVKWGNRKRIFKMVGVQFEIKFCKAEQLLKDSLHNDTTAQKLKMVEMMIRAYEQLNIKCEESGYIMIQPNVKCFNFDNKTALVCDTDDEKPALEMIHKDENDIMIFSIEELLRCIPDDFMKAKELLSKLDKSVNFQKVNYV
Ga0208667_100025437	F008346	AGGAG	MPIKLKPSAKIRDRATGKITTEHYYLKCMTLKELNDYIESSSAKKKVIQKCKNEIIRREK
Ga0208667_10002548	F028655	N/A	MKLIDKAKAHFDSLEIKEIEIPEWSDGDEVLKVYAKPLTLAEMSKLQRYAKDDDVALMAYCLIYKALDSDGEKVFDLSDKHTLMNGVDKDVLARVATEIMSAPSVEQQAKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1000254

Overview

Ecosystem & Geography

Associated Families

Sequences