Basic Information | |
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Taxon OID | 3300025070 Open in IMG/M |
Scaffold ID | Ga0208667_1000327 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21320 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (22.22%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005194 | Metagenome / Metatranscriptome | 409 | N |
F009788 | Metagenome / Metatranscriptome | 313 | Y |
F087884 | Metagenome | 110 | Y |
F099114 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208667_100032714 | F099114 | N/A | MRGFFYTLNLYGHLSIYICMALTIQDQPTTNIPEPSFAPIEYLVSSTNTTQSGFKVIASLFTDPSGSNTKIATLQLNTIPSATQVVTDIQNIIQSFVTSDYSILTGDTVDVSQSDLTDFKIAFQEYYSGALQGSAVSGNTFTSWNASPKYIEWVDLSGGTKKYFDYSIEDASSETDKEFLNGFSQEAEWFNLSKANNFLKIRSIQKYQASWIMRGGNTDTYKIYLLTMDDTFSTILQTTMTAANTAGLYKLDVGPSEVASHSWGSTPVMTNVKYYALRILNFTEDVWATKTIMFEIDDCENTYTDFELHYLNRKGGYDSFTFSGKSQQNTDIKKNFAKYNTRTIGASSITHKTYAQRKRAFHTSTMDKFKLSSRLLKDFEVEGLEDLVSSPEVYWKNDGNFVSVNVTNNSYRHSKSENGEVYSMELEIEIDNSDKRQW |
Ga0208667_100032718 | F087884 | N/A | MDNTQSYNITVGQYQALNDIDEGLSLIEQNIYAVAALKDITYEEAAKIKMSEFKKIVEIIQEFNVTLLEKIRIKNKVFLNGTEYHLEHKPDKLTSGQLLDVINIRSKHQGEAVKVMDLLLAAMSRPKGKEYGDDKLTLTERAALFKGVKLDEVWNVFVFFWNLWNDYFLDSEASLRKWMGETVEMTREILDNDGDSSV |
Ga0208667_10003274 | F005194 | AGGA | MEGIKAEHPQINTILKGNIYDVDLTKDVTGSYLIYEVVNISPNGFNGIDYSLDIFLCDNVTEINTESNEVSVQNECCLIALDIMSIFENYNKATYADKDLALVLNKTWSIQPFTERFDSLYSGAAISMSLSSAYGYARCKIPI |
Ga0208667_10003278 | F009788 | N/A | MDIITKDATNYIYCNISNEVENTYYTMSIEAPEYEVNVTLEAPDGVNDRYVAFELIEGTQDLPNATIELPNNGDYPYKIINATSLGGTEGIEIHRGILRLKQPKEIVYSYTDEQNTYIYE |
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