NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000671

Scaffold Ga0208667_1000671


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000671 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14109
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (93.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011052Metagenome296Y
F052938Metagenome142Y
F066141Metagenome127Y
F066844Metagenome126Y
F086177Metagenome111N
F087774Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100067110F066141AGGAGMTRKKELLMLLDRVNNCLNVELDLNNAPIYGGWQLTNKEGSHIIKHRVSIKEMICFLDGMAKSLEMKETI
Ga0208667_100067115F052938AGGAGMIHWKTKQEMGEGYQYNQDEHNDNEYNSLVVIDEHETNTMRTKYLIRDVWELEELIDLKIHLDDIINERKQ
Ga0208667_100067117F086177GGAGMTLTNKIVLMICLMMGTAMFINGLNELMYEVGAVYILSYTISIIMLCVGIRILTKVEDSTNGRRRTV
Ga0208667_100067119F066844GGAGMEDEYVYSLECNNCGDMTCAEVCFFYKDEVYCEWCCPEGYGE
Ga0208667_100067122F011052GGAGMDIDNYYKQLEGFKIKSYLGESKDGFPQFQLTKPKYADVLVEVSADGEGNYGGVLFLSEYNAS
Ga0208667_10006719F087774GGAGMAIKTINATYWKQSTGLTGQNLTQSNQKKFTRIAKKYHKITEQSLSKMKLYKASRIGARQIKKEFGARIGSTSIATFEMLLTAIDQELKGMKTAIDFGSFKVKSYKDFSNSNTRKKA
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