NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1001294

Scaffold Ga0208667_1001294


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1001294 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9371
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087884Metagenome110Y
F099114Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10012946F087884N/AMDNTQSYKMSVRQYQELNAIDESLSLVEQNIYAVAAIKDITYEEASKIKMSEFKKIVDELNAFNVKLLEKLRIKSKIFLNGTEYHLEHKPEKLTSGQLLDVINIRSKNQGEAVKVMHLLLAAMSRPRGKEYGEDDITLEERSKLIQDVNLQDVWNVFVFFWNLWNDYLNDTEDSLSKWMAETLEMTKQILENDGDSSV
Ga0208667_10012949F099114N/AMALTIQDQPTTNIPEPSFAPIEYLVNSTNTSESGFKVIASLFTDPTGDNTKIATLQLNTIPSATQVVTDIQNIIQSFVSSDYSILTGDTVDISQSALNDFKIAFQEYYSGALQGSAVSGNTFDSWNSSPKYIEWADLSGSTKDYYNWSIEDASAETDKEFLNGFEQDAEWFNLGKSNNFLKVRSAQKYQASWIMRQNLSDTYKIYLKTLDSTFTNILSTTMTAANTAGLYTLDVGASEIASHSWGTTPVMTNVKYYALRILNFTEDVWATKTIMFEIDDCDNTYTDYELHWLNRKGGYDSFTFSGKSNQTTNITKNFAKYNTRTIGASSITHNTYAQRKRAFHTSLKDNYRLNSRLLKDFEVTALEDLFSSPEVFWKNGSNFMAVNVTGSTFEHAKSENGQVYSMEVSMEVDNSDKRQW
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