NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1002121

Scaffold Ga0208667_1002121


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1002121 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6665
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005590Metagenome / Metatranscriptome395N
F009460Metagenome / Metatranscriptome317N
F054773Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100212111F009460AGGAGMAKWDLSKLEDCASVGSHIDEDSSTPTQPTPLMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLEKKL
Ga0208667_100212112F005590GGAGMTESLTPLERWKELAIIENARMKRRLIGRDVMHAYAYKPWPLEKLRKEIKRCLSRHSELSVGDLCSMIEQDAVHIDIGLKTMRERRTIVKTSFIEGQQLYRLRTQEEFAL
Ga0208667_10021218F054773AGGAGGMTKQENIISIVSEAVEKAWEGSSSAKEASEKYLVMLEQDDVLREEATRRHLERIAYLDVVAQPRGYRARLKRAAHQVVLSKGETSTPAVSLKNMAPAYAKDMFERWLLPNTGICLGDATGEDLEQAIMHETSRSKHHEGQRSFYSAIKARVTDDKVVRDVWNISEVKAEYEQALVE
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