Scaffold Ga0208667

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1002642 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025070 Open in IMG/M

Scaffold ID

Ga0208667_1002642 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5732
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5732

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → environmental samples → uncultured marine virus

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.21

Long. (^o)

-77.52

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005945	Metagenome	385	Y
F008547	Metagenome / Metatranscriptome	331	Y
F012662	Metagenome / Metatranscriptome	278	N
F012863	Metagenome	276	Y
F032086	Metagenome	181	Y
F052535	Metagenome	142	N
F057323	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100264210	F032086	N/A	MNNNEPTFLDMNDLCDDSLEALIQHYLSLKHKMPDNITVRERLLELEREQFNREKQQTNTTNE
Ga0208667_100264212	F012662	N/A	MKEILLQPADMIEELMYHILWNEFDGELDPDHKYFPLYLSLQQLLEDETKRL
Ga0208667_10026423	F005945	AGAAG	MNINDQTDTFQYELAKLIYRFKSEYDINDYTIAGCLDFAKLSVLTETDDVIFTGELTEDVEEDDEEDIQPHF
Ga0208667_10026426	F012863	N/A	MKNYKDYLDYCQSLAEDINDSYSDDIEVTDRIHEIADGCQYVIYYSKAWDLVNMMREYNHELFMQAVDEVRDNGFEFDNEDAMRDLNTHMTWIAFFLIRNGTYSAYQHIESEVVA
Ga0208667_10026427	F052535	N/A	MKRPYEVLALDDSNTPVKIATIIENSPAKAKASGQKLAKSLRQRFHTVQLIKE
Ga0208667_10026428	F057323	N/A	MMKILVLTIRAHGEEDDIYVFDNREVNVLPTIKEWVKENDIKLTLPDHVTDTHSFMDWFYDTENSLEIGTDFFVGLQYKELLSE
Ga0208667_10026429	F008547	AGGAG	MSVTIYLTDHHGKQIAFFYRIDNERYSLTPQLLWCCRNYPEYQGTAESKEHFIEQAKGVIKQLGKRSVPVCKDCGLTNPKMEAQDTCPECLINE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208667_1002642

Overview

Ecosystem & Geography

Associated Families

Sequences