NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1002935

Scaffold Ga0208667_1002935


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1002935 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5344
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017135Metagenome242N
F058153Metagenome135N
F064230Metagenome129Y
F072361Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10029351F058153GGAGMARFDFYEILINHPTWEENYHDITDPDIRRELMCDVEQNSSEIAPTAMQQTGSEIEWVDLIFNDEVDPSVVVQKTRELLWNYSESMIIDLIESEAAKHAEAYDA
Ga0208667_100293511F017135GAGGVIPIISCPLPGGGQALIKTQDIGGATTGANPKHCDVYVLGWATNGITIDLSLDDFAEIWVSALFDEGSDDIEIVFTPDEVH
Ga0208667_100293512F064230GAGGMTLKSYLPQMKCTECYKIMVPQFRKEYPHKLDGWSCDCGNCEKAILRERQYKREHDGEDQQRASGQRI
Ga0208667_10029352F072361GGAGGMLDLSQSDEQFLTERYKDFLTVASRDFRHGFMDGIQCNFQHRPATDMYLAGYADGYALTQMRDAASHAGETL
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Institute for Fundamental Biomedical Research
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