NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1003263

Scaffold Ga0208667_1003263


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1003263 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4990
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F007417Metagenome351Y
F008281Metagenome336Y
F067646Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100326315F067646AGGAMLDWILYIIAGLFGLVAIGGLISILAAIYILRELD
Ga0208667_10032632F001942N/AMPRKTSDQHQANSRLGALGESLVQTFLLEYADFCFPTQEKHPADLIVEFGNAKYTVQVKSRRATKEKKFVFAAENSRSMSDTYRNYTCDILAFVFFYDEQKRIMFKSNTSSQNYFTFDKKVITDTMELDSLQESLDTLSAVPVLNPII
Ga0208667_10032635F007417AGGAGMTRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIAEGHKVKLTKESK
Ga0208667_10032637F008281AGGAGGMNLMCNTKHGAIQWRWKDSGQPSPEYKSLNHQWWIPKKSEFELVSKVDASIRQEIKDEIWEDMQSDFEYQKSIYKIHKLNKKNLK
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