NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1005773

Scaffold Ga0208667_1005773


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1005773 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3286
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004343Metagenome / Metatranscriptome442Y
F008882Metagenome / Metatranscriptome326N
F076030Metagenome / Metatranscriptome118N
F088712Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100577310F076030N/AMDKKLPKKGTPGRKKIHFTEEQLLEAERLAGLGFSEESLCKAVFGCSVSTLQRRKKEFNNIDQYIRRGKIKSIEAVSSALFDSATGRNGRDPSVSAQIFFLKNKGKEAGNPWADVQQVDNNINLSDIISSANSRIIEHKGDALPSAPKEIDIKQLNKAKNS
Ga0208667_10057732F004343GGAGMTQHKEMIEEARRLLKTERENIPSMSKNFNKDYWLLTYPCGKIVKTYEDKRKKDVVIQES
Ga0208667_10057735F008882N/AMSVTRYNFSKPKINRQELELLNWFLAHTDDNPLINPNALELFKANGYSAKNYQDLVNKVKTILKTYKTKGEL
Ga0208667_10057738F088712AGGGGGMYIPIETKETYNGKQYIMQAGLVKGRNHLLRNGWEYCANGTSLTNGRNTGSYNRFMKCWSFDNDILNITDHCTYLTEQSLTMQNLRGK
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