NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1006340

Scaffold Ga0208667_1006340


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1006340 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3066
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → unclassified Woeseiaceae → Woeseiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F004603Metagenome431Y
F027830Metagenome / Metatranscriptome193N
F044193Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10063402F027830GAGGMNNMTFNIAFGKYSAHYRDQGFGGELPYISETHSKATGEGGYLLRDENDRHIAYVSKDGKVQA
Ga0208667_10063404F004603N/AMIFSININGNIVDWCYNLDCQDKQYHKTWIPKLRDIQIITKDLKGLTISEVKKIILEDIQPDINMVKEHNNKLARARRVKNV
Ga0208667_10063407F002399AGGAMNIPKTRSHKSVIGQLRKKYGLKDNTPVHKVEQIMTPKDWKTFSEALTFPNGKPTQRRKXXVN
Ga0208667_10063409F044193AGGTGGMIIKEYQKEYKDYFMFITVHHSLIEVSVHSYIDDDFEYRNRYIDYSAEEIYESICYRIDNNDLLEVA
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