NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1007147

Scaffold Ga0208667_1007147


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1007147 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2811
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034399Metagenome175Y
F043150Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10071471F034399N/ARGATILKTFDDLRHDIASEERFIIKQREKMDRMRSLEAGVRSGNISTDLAMFEISISNAEDRIAKHEEKIKELENES
Ga0208667_10071477F043150AGGAGMVNTVSVNRRNSINMDNVDISLDNFRKAFERDPTQDEIAMMMKLKALKQERQINTSNTGNLMDRSKVSQEIAIARANKTLTNKVKCTPRGIQINKMLNYGLTAEQVMDVLQLNEVQVSATVERFKLPRPVTDLVFHQKVRN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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