Scaffold Ga0208667_1008288

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208667_1008288

Scaffold Ga0208667_1008288

Overview

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1008288 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2527
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001166	Metagenome / Metatranscriptome	760	Y
F085542	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10082881	F085542	GAG	MFFTAGGSAALGSVLKGVFGAISDSRQQKFELELAREARGNEFALKFQEQLNSGEGGMFTRVTRRMLSFILCGTLSAVVILCTLFPSQKIITLTNPSGEQSTDILFGLVTFPASQSPVVLSTGHLSAYFVIVLAPMVLGFYFTPGGRR
Ga0208667_10082882	F001166	AGG	MLKNMATELGENVQVKANLAFMAKVIAIVGTCVWGYSVVWNKLMVLDSSLDRVQHEGTLLGDLSARMMHIEKFAEQSKADLNHLLEMQDAPITSDHQQFERLKYLEKEVDRLRAKFDNLMYIAR

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