NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1009332

Scaffold Ga0208667_1009332


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1009332 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2322
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013838Metagenome / Metatranscriptome268Y
F027314Metagenome / Metatranscriptome195Y
F032817Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10093324F032817N/AMAFNCSILLSDIDINCNKRVTGGIKKAVLLLQKDLTITFDPVDETQVTQVDTVDTVKFEHNPKDGTTTFTENKNTSNGLGVVSTDITIQAPAVDNKVNQIDLMSRREDICCVLLHNNDTVTISGWMDGLTMNYEANSGTGTGEKSYVNITLNTESGIASLAINDKSVFSDQTIFD
Ga0208667_10093325F027314N/AMACNVTLADISYSCDDVAIGGIVELHVANKTDAVSALTLDASDRAITAASAVTGVSQISFNNKDGFSVFSEVKTVAADGVVSTVPTVSVELPKMTAEKITALNDISKGGAELVAFVETAAGTFHVCGLDYGLYAGTVDANSGTGRSEKNRFQLTLTGDELGLSYSISSADFATATA
Ga0208667_10093326F013838N/AWVFDYFAKLSAEKALTVAGTELTTEMAADASVLDFAVGGALSSANILDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAA
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