Scaffold Ga0208667_1012981

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208667_1012981

Scaffold Ga0208667_1012981

Overview

Basic Information
Taxon OID	3300025070 Open in IMG/M
Scaffold ID	Ga0208667_1012981 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1822
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.21	Long. (^o)	-77.52	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002858	Metagenome / Metatranscriptome	525	Y
F023856	Metagenome / Metatranscriptome	208	Y
F056586	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_10129813	F002858	AGGAG	MFIDEKSIYVVDGGDYSVYCFGYTQARTVTNDIMRRDPWGGIPFVLRQDLEVSFDDKGNVVMPRVVLDKILFLASDELPEGDD
Ga0208667_10129814	F023856	GGAGG	MRCKACNRILEESELTKKDAQGDFLDLCGICLSAIASAGVDSETMQYYQYEIFTEDENYDTLY
Ga0208667_10129818	F056586	N/A	LESPPMVGPTTTREALEMKRTYQVIMTKVYEVKVEAESREQAEEIFDNFGDWEELLRVHTLDIEPADYLTLRKED

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