NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207896_1001551

Scaffold Ga0207896_1001551


Overview

Basic Information
Taxon OID3300025071 Open in IMG/M
Scaffold IDGa0207896_1001551 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-36 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4446
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005178Metagenome / Metatranscriptome409Y
F012529Metagenome / Metatranscriptome280Y
F036003Metagenome171N
F049285Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0207896_100155113F005178GGAMMYVLVWMQLFSTQTVEHYQLGSYATLEECQIQLSKAAKMVTHKSETVACLEVEVQQ
Ga0207896_10015512F049285AGGAGMKLIKVRVNKTVEYEVSVPVQDDHRYEQVRDYLQSIDWEDEIEVSPQNYKHIAEYYDWLDWETDNED
Ga0207896_10015516F036003AGGAGMNTRMFNYKDKSVMFINCSLDHCYNTVDYMIERNKNNGYWKPRLYDDYDQDHSSVESIYDWIEIKDRVTDLSPITTDEIERAYNEIQ
Ga0207896_10015519F012529N/AMIQDKTYKIKVGDYHDAVIYVYERHTKCLNPKDKPEDHKWKHWKEVAAVIPVNNDFDDYQDTSGRFYTNVRVVVDALTELYGNSPDYEMGVSYTMNTHQYINV
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