NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208920_1000970

Scaffold Ga0208920_1000970


Overview

Basic Information
Taxon OID3300025072 Open in IMG/M
Scaffold IDGa0208920_1000970 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7315
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.61Alt. (m)Depth (m)105
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008105Metagenome / Metatranscriptome339Y
F014794Metagenome / Metatranscriptome260Y
F018622Metagenome234Y
F018815Metagenome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0208920_10009704F018815N/AMNNCLENVIEHLKPFLLKDIIIRTDKKILKRGRLKIFQIKQYYINLSLEYKNSIKNYEIPYPFDIHLEQDETEAVLNYHLSSFIPISQLNKVKCLNTSSKTKIYNNLVYIWPSEETTV
Ga0208920_10009705F018622N/AMIVQKATLDPLLQTHVCEVRFPRRIQKPGLALTRRMLCTNSIQLLNSVNGRISLNYFTPKGPPKAYLGPDDLAVAWDILIQDYRNINMRSCNLIQEIPANDDFWEYFNENIYPMSAKQKFDFMNS
Ga0208920_10009706F014794N/AMAMASIDNLAPTRSLIDLSKPDKGDFGIDDYELSFIFDDILLIEYADETKEGEIERNGVLIPTNALNKAWRKGKVILAGPDAKYAKEGDIVIFPNNMGVTINGVGITGKGKVKTGVFLNEERMFGICKKKDDSPKSDS
Ga0208920_10009708F008105N/AMNFFQVQNKLFYSKKDDAGYLDTEGEQSFVPFLFNRWLSFYDNNMSVFVNETFNRFGNIFDNKQESYKLYYHLIPRLKWKKISYIKKKKKEEQEIDLTAIAKNRNMSVRELKMYVENYE
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