Scaffold Ga0208920_1024531

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208920_1024531

Scaffold Ga0208920_1024531

Overview

Basic Information
Taxon OID	3300025072 Open in IMG/M
Scaffold ID	Ga0208920_1024531 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1286
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.61	Alt. (m)		Depth (m)	105
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013467	Metagenome	271	Y
F036024	Metagenome / Metatranscriptome	171	Y
F066274	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10245313	F013467	N/A	MTFGNLRNWVWCEDCLEWRDADEVNFVSIEEDSFGKDMLTFACDKCGNDNKNNIIQSSTRPRG
Ga0208920_10245314	F066274	GAGG	MMIELASDEIGWVKYALTRAASTMEGRDPDMTRKEEKLLMRLVRKIEKQEEENLK
Ga0208920_10245315	F036024	N/A	MGMTTEYRMGRIGDEDTFLKLDEAQKICQAKFAEYISEIKYEDGEEAIDDYAWHIVTPERFEKDWENDERLKKTDEIKAKYKNLVKNNRVVFFEIDWN

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