Scaffold Ga0209615

Basic Information
Taxon OID	3300025075 Open in IMG/M
Scaffold ID	Ga0209615_100023 Open in IMG/M
Source Dataset Name	Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209615_100023 Open in IMG/M

Source Dataset Name

Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15744
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (80.65%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (62.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

15744

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (80.65%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (62.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: Indian Creek, Illinois
Coordinates	Lat. (^o)	41.6655	Long. (^o)	-87.5437	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indian Creek, Illinois

Coordinates

Lat. (^o)

41.6655

Long. (^o)

-87.5437

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209615_10002312	F012670	GAGG	MFDEIRPEGSMVSTEDKKAKARAAWAQKKALKIATGEIIPEIKPSANPAGRPKSIVNRVTEYGALFNKLNEERLSKGLSPLKTAMEVLIDAMQSDEIDIKDKARIADKLAPFESSRAPIISIEHVQNISKDEEVSADEALDDFLMAIRKV
Ga0209615_10002313	F001915	AGGA	MKWNLAHPLKDVQDIIEMGLDNLSHEENGILNASVDVFRKCLTVTATVQLFDKSKELLAVCRTDDERLLGYCWFDRGGYTTYSKDEISNAKFHHVDLSLPVRLRVRLINEMIDQHILWANLWGIPVVCSTSIRSEHDGFMRIHKKRGFKVSGSYAWIRTEEGIKCLMK
Ga0209615_1000232	F003521	AGG	MKSLVLNIRDFFNRRTRVEDAKKEANVNRRTLVIENGECASRLMRNEDFALLFNLYRFNLLERLEDCRTDLERIDNAHDVAGVRDFIAFIEKTEYLGKVAIKTNT
Ga0209615_1000233	F004695	N/A	MLDRQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQAVQATEMVKYMINSKNDSYQIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETLAAEKGLTVKRQNMKKIDVDLAGVAQEMMAPEEFDSTPSSPQEDINGAINANTIYRAKYKMTGFSTSVRIKHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKAQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWLRKDVDNDGEEEIVEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDSTKHVFEFAPMQGNLAYVQSSMQRFEADKMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLKSVIYIVWKTLIQYADDYNIQQLANVCAKGKPFMDAESMNNYEFIDRKLINIDLALGFMSDENRLTRQQLIVQSQQAFAQTMMQLDPSVPELFAKVRRPFEDTLRVLGVKDVDSYLPTIEEAAKMMQVKSQQPTSPEHDEIISRTALNKAKAEETAANTLFTQKKAEDIDTDNMFEALAAKRGKLTAVQVD
Ga0209615_1000235	F006264	N/A	MEEPTNLFRQKLPAQSEVCARKALEWLQKDLQHEHDLNPQEIYYLACAAQILLGMRDFYGQK
Ga0209615_1000236	F001059	AGG	MATYDIEALKADLPTAKELAQFVYDKTQISLDFIGKPKGDQYQVAKNALEGKKFPSEYMTELNPYLDKKELIPEDNIKPLPPRSEDLPPEDARVHFFGATNMPHPTDPQSDRKVQINFRKYDNGAITFQITGPLEKIAIGERVNKFGQKQPEKYSWLDPRTPETLMRRPDGTFTEKGRGLYAYCNGEKGSGIWPLIDRDLTNFTQKNVTDPWA
Ga0209615_1000237	F040590	N/A	MSYGTVISGGARMTKGLTKGINDKLAGFAEGHKMSATLANSVRNTFNQNPLSDQHLNNINVAAAKKFTTPKLPAKI
Ga0209615_1000238	F099270	AGGA	MNTNFLYAQAPNRKGNMSKHLPSKSGGSTNITNEKHGTATPTGNQGAPKATGNIASRNQKLMVSTHADYCGTIKNDGYMDKSVKNYLG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209615_100023

Overview

Ecosystem & Geography

Associated Families

Sequences