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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025075 Open in IMG/M |
| Scaffold ID | Ga0209615_100185 Open in IMG/M |
| Source Dataset Name | Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6831 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (85.71%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indian Creek, Illinois | |||||||
| Coordinates | Lat. (o) | 41.6655 | Long. (o) | -87.5437 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007029 | Metagenome / Metatranscriptome | 359 | Y |
| F015095 | Metagenome / Metatranscriptome | 257 | Y |
| F027413 | Metagenome / Metatranscriptome | 194 | N |
| F029049 | Metagenome / Metatranscriptome | 189 | Y |
| F066777 | Metagenome / Metatranscriptome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209615_10018510 | F066777 | GGA | METAGIDVGELTFIKEGIATTIHDDGTTTVMNAKQCDQCNEWQTALGGFSYRDVSGEVVLWLCAQCRA |
| Ga0209615_10018511 | F029049 | GAGG | MVMCTMSRVAKVILDRSQEITAHKKGLERAISINADPGDANQFGQRFTNYHEFIWQKAESAGAETAVANYFGDYGFVPKVDTFHDEADVGENIEVKWTKHANGHLIIQNRPNPRPNDVAILVTGWSPVYILLGWMPVHMAMQPRYKHTYQDNYWVPRANLFEMQYLERSNYGDV |
| Ga0209615_1001852 | F027413 | GGAG | MSTWLPEWRITVGTTVYTNVLSVTMATGRDDIDLQCNAGYARMEIVNVNNTAFDIDVTDVLTLELKNSSGTYIPVFGGAVSDFGISVRSPEEVGFITIGSILAVGSLAKLTKALFPDALPKTEDGTQIYDILNELLINSWFEVAPALRWMDYDPTTTWANAENVGLGEIDQPGLYEMISRAADPANSYNLCAQIAQSALGQIYEDKAGRVCYADADHRTAYLSANGYTTLSANYATPSSVKSILQIGKIRNSLVFNYGNNYNNQATALDADSIANYGRYQRAVNSNLHNLSDVEDVMDRELGLRAIPREQLQAITFRLDSGDLPDAERNKLIDVFFGEPIVINDLPINMFNGSFNGFLEGFAIRATPQFVDITLTLSPTDFSLVAPQWDTVSPANLVWTGVNATLIWENAFGGLT |
| Ga0209615_1001857 | F015095 | AGG | MERAQLVVGIALGSFTILGLGAGLVRHLVKYYLAELKPDGNGGHNLAGRVERIEKRVDRIYEILLEDRLAK |
| Ga0209615_1001859 | F007029 | AGGAG | MGFLDNYEDVNARIKRFRLEFPSGRLVAYIEDLDIIKGTILVKAEAYREYEDHLPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLEHNSRPTAQDMEKVETLPADSDPWSTKASIEDMATMASSILEIGKELGGELVAEAPRCPHGTMVWAEGTAKATGKPWAAYKCTERVRANQCNPYWHVLGSDGKWKPQV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |