Scaffold Ga0209615_106457

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209615_106457

Scaffold Ga0209615_106457

Overview

Basic Information
Taxon OID	3300025075 Open in IMG/M
Scaffold ID	Ga0209615_106457 Open in IMG/M
Source Dataset Name	Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA to study Microbial Dark Matter (Phase II) - 4B3 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	663
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: Indian Creek, Illinois
Coordinates	Lat. (^o)	41.6655	Long. (^o)	-87.5437	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022657	Metagenome / Metatranscriptome	213	Y
F051787	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209615_1064571	F051787	N/A	FKEIRKQQVGERLSNARKNFQDKELRNEYVYNELRDKVAKVWPEARGEIIPGIANIDLIASDENLLALVRDGLKFRSKLTTKSAGGSFAALTQRRGSSSTTRSSEDGMNKLREQAKAGDKKAGDNLLVQRLQQIRGGRR
Ga0209615_1064572	F022657	AGGAG	MAEITTSQIGNGTTAYGADIVVKDLDLDVSNRVKDDTPVLNMCMSKKRKVNSTLPLWTDDIYRLPAAQAVDE

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