NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208668_1001593

Scaffold Ga0208668_1001593


Overview

Basic Information
Taxon OID3300025078 Open in IMG/M
Scaffold IDGa0208668_1001593 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5892
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.61Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008782Metagenome / Metatranscriptome328Y
F009300Metagenome320Y
F014804Metagenome260Y
F018080Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0208668_100159310F009300N/AMIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGKQEHSISQLGIFAELIARHLMENNNGIKYKAAPLIGERPVVEADLIMQGIGEFHYIDVKGVKSEGNTLRVNFKAHNNPQKKVTHYLFIQPLNALYARFCWFTHEQVSKWTVVMSTYTECYELEIPKNN
Ga0208668_100159314F018080N/AMEYLGIEIYNHFSKVYTYLVWNGDMLVGEIAEDDVMKVLNKEQVIDFYHRDKHKFKVPKESLLKYAKKLQAND
Ga0208668_100159315F014804GAGMNDDWIDNILDGEPSGITDTQWLIIEGNIDLTSFTERMKSDILGRINDLTELEAEEIITKIYENKYEKDTRKQWEKMFKDGVFGHRDL
Ga0208668_10015932F008782N/AMKKPIFRVFVSYEIKNKKTVTRKAVTGILDTFVLTSNINEIKNDQELIDRICYINKKNLNKVDVIITSIDIENQYGETTDRFEDEY
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