Scaffold Ga0208668_1016782

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208668_1016782

Scaffold Ga0208668_1016782

Overview

Basic Information
Taxon OID	3300025078 Open in IMG/M
Scaffold ID	Ga0208668_1016782 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1516
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.61	Alt. (m)		Depth (m)	250
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009213	Metagenome / Metatranscriptome	321	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208668_10167821	F009213	AGGAG	MQEKKVYLRTTRNLYYKQEKPNLKVYYSYTTPVALEIDGQLKVSENQWSVTTARHLTWIDGGNKKARLKRDEFNQLLKQHKPKPNFLKTVSMVSAMFGLMSQGQDQKKTNDQKKRFFNKVNGLSFPDDWETLSEEEKSKRLEKVEKVGLDKI

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