NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207890_1008090

Scaffold Ga0207890_1008090


Overview

Basic Information
Taxon OID3300025079 Open in IMG/M
Scaffold IDGa0207890_1008090 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-48 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2292
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0005Long. (o)-144.9964Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F021188Metagenome220N
F046006Metagenome152N
F090883Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0207890_10080902F021188N/AMKTTEEIEIIWIPEEETKHSLTVENAQGVSELVDLPASTVDRICKKKYGHTNWARMGAIFPEELGRNPHEIDYLEGIVYFKNSRMV
Ga0207890_10080903F000720GAGGMILNKENKIVRAAIPDRMMSTTFTLPIDDRKVVGIVNYTADVNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFTKNVEDIIMGLPIDKKQRMLSTDPYASQMKE
Ga0207890_10080904F046006GGAGGVKEYLGPLAKYINLILILIILHFCITVMVVNFRYIDRLNNTIDTMWHEIEQVKETNISLYQFIEEHGNDFK
Ga0207890_10080905F090883GGAGGMVTIALTMQRINNCRDMLTQAQCPRMRLMWKRNYEKLLKNYWEEQGERILRAAGKIH

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.