NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207890_1008588

Scaffold Ga0207890_1008588


Overview

Basic Information
Taxon OID3300025079 Open in IMG/M
Scaffold IDGa0207890_1008588 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-48 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2215
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0005Long. (o)-144.9964Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020604Metagenome223Y
F067196Metagenome126N
F069345Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0207890_10085883F069345GAGMILFTFLAKQKMMVDCPECSHSDRKGEVEHEQFEMTSYGVYEPCGVWKTCENCSGSGEIEAD
Ga0207890_10085886F067196GAGGMPKFNNIEEKQKFFRMALRKLDTGLPNEASPDLIKFFVLHVITAYDHDDCWDDVKGFIDFALKEKSQFDSARQAVEDADNMLDAITSSKDK
Ga0207890_10085888F020604N/AQWRRDRCQARLDAFNALEADQQAAIRQTFKDLEAAQTTLSECQDLWLSDSKELDHALWHLRSLAIFDPENVDL
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