NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208156_1000373

Scaffold Ga0208156_1000373


Overview

Basic Information
Taxon OID3300025082 Open in IMG/M
Scaffold IDGa0208156_1000373 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18429
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)275
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003135Metagenome / Metatranscriptome505Y
F007012Metagenome360Y
F016058Metagenome / Metatranscriptome250Y
F018077Metagenome237Y
F033759Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0208156_100037310F018077GGAGGMTVKTVFSQLEKLFGRNSEAYLVQLINDGLMDIANKKQGYTVSAVTDLEKHKRWYDLPEKVMSIERVEILDTNDRYILIPKLSDPHKLLRADTDASNDALK
Ga0208156_100037313F016058AGGAGMAKATKEVEEVKTNNVAEPVDKAKEAIDTLRVQLREHLQQAEHHRTMATKAQGALEVLLQLHPEENNEN
Ga0208156_100037320F003135GGAGGLDIIGIIETLGIPVAVAIGLGYALMYLIKFITKDVKADIKNLYDITVKLIDSNRQAKDETKKTMTAVNVIKDIVIKLFKKGEK
Ga0208156_10003734F033759N/AMIIKALILTTLLNSEPTIVAMPPDKIEAKRRRGKGNKGRRRGGNGLR
Ga0208156_10003738F007012AGGMAILFICHRCNTKVECETKAEMICDCGAYIKDHDDTRNHVNMRNTWSGTTKVEFNTTTMDKDIAERNSR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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