NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208156_1002901

Scaffold Ga0208156_1002901


Overview

Basic Information
Taxon OID3300025082 Open in IMG/M
Scaffold IDGa0208156_1002901 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4987
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)275
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047110Metagenome150Y
F058213Metagenome135Y
F081424Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0208156_10029011F047110N/AMKTVVSINWKIKDLIRNKLSFEKWHLDVFDSPAPKKVLNKIKAKAKELAEMKQAVLLAAKDEASA
Ga0208156_100290113F081424N/AMRDRIELEEVFEADPQARAEFNAVCDEWQNEAIVAQDEEVCWCKFFESCPLCFGKA
Ga0208156_100290114F058213N/AMICYECGTKAQRREIRNAKKEMREPQITDRCGSWEKGQCGTCRKRKIYVTPISDFIRVSV
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