Scaffold Ga0208156_1018963

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208156_1018963

Scaffold Ga0208156_1018963

Overview

Basic Information
Taxon OID	3300025082 Open in IMG/M
Scaffold ID	Ga0208156_1018963 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1567
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	275
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F046426	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208156_10189633	F046426	GGAG	MKLRLKLGIVLVCLTFSMGCSILPELVAPAANFAIGFYDHDDYYSKECLWYDEVKLNEKTKKWLMESNPPEVVSKDLAVVSRNNDIYKEVCEREKSMLDKVEDKVRRLTDE
Ga0208156_10189634	F002078	AGGAG	MEMFMNQGWFQIAGEIVLMFTVITGALPDRWVQKVPILGTMWPMFNWLAGNIFNNINHPKGMAAKAEVEKEIDEAKAKVRDRVGMPDVLDGM

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