NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208156_1057782

Scaffold Ga0208156_1057782


Overview

Basic Information
Taxon OID3300025082 Open in IMG/M
Scaffold IDGa0208156_1057782 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)763
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)275
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005580Metagenome396Y
F010737Metagenome300N

Sequences

Protein IDFamilyRBSSequence
Ga0208156_10577821F005580N/APSVTGMASGLAIASYLNAGTPTTTKTGTSLGSVTVMGDGVVKDVTDGELGKAFNTLAGNAINMISSDQGRKTLVTAGGIALIGAFARKQFPQLKLGGSKLYFRI
Ga0208156_10577822F010737N/AMVTTITRTYDSTPTDKTYFSLTDNMSSSSLGNIQTPQGSSRISRIDVAVDAPDTKGFVLAGRLLGSNMSEQNLTLAGSCGDVADAGGTPQFNMIPTNFSVAGVNNIDLQVAFQFTTGTPTASGLSVTLYFE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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