NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208791_1001219

Scaffold Ga0208791_1001219


Overview

Basic Information
Taxon OID3300025083 Open in IMG/M
Scaffold IDGa0208791_1001219 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9700
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003225Metagenome / Metatranscriptome499Y
F008883Metagenome / Metatranscriptome326Y
F042908Metagenome157N
F056585Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0208791_10012191F056585GGAGMIRETWEMWADEYQEYYEDETPVYPDDMEEFKKEEQK
Ga0208791_100121910F042908N/AMKFSHGDALTAGSANHVLAVPAGHDAIVTYLFISNTGSNKSISAKWVHGGVDIDFIAGKNVSADDFLEFGGQHGEFLVAKEGDTITLTPEAGSTFVSIVSFELIPATPRLNF
Ga0208791_100121916F003225GAGMTTELETYFNNYNELFNSEGFKQLIQELSTNAQQLADIQTVKNEEDLFYRKGQVAAFATIINLQGTIEAARDQAEAEEEGPVDV
Ga0208791_10012193F008883GAGGMNFGHYTIWYNHEAHVWDIYDGRKGFKYPEYTINNYSRLLCTLRDKLSRFDTDRNRGLFYRFTRFIRRLRNV
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