NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208791_1009694

Scaffold Ga0208791_1009694


Overview

Basic Information
Taxon OID3300025083 Open in IMG/M
Scaffold IDGa0208791_1009694 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2314
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010318Metagenome / Metatranscriptome305Y
F061778Metagenome131N
F095310Metagenome / Metatranscriptome105N
F106085Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208791_10096943F061778AGGAGGMMNKYRIAVHYEEGFTVEVTATNSDEASKVAKEFVSANCGVSESFDNVGEDEGKFVKAYHRDYWIVGER
Ga0208791_10096944F010318AGGAGMNVDSDKPRYIECIYEANITFDLEELDIDWDNVKDYYIKYGTLYVDFKDGSSEEYQGEQGETDWKWSAQESIFTEDWTLVEGLNXXTKHYTKD
Ga0208791_10096946F106085AGGMTNNLLESLRKKLYFSLDKVRNKFTIFKKLKGNNKIIINKDNKNNIPKHLRELNKETLQTLQELYKERM
Ga0208791_10096949F095310GAGGMKMFLIKLLTGIAVFLTMYLAVLILNEETMENADDILTLNRKVESLEETLQAVKQQQEYLQIMQKGLRESINNRTIEVDKKVEEAVDNKFKEQSATGGLGVLTGEQVLGTEEAVVEXVMM
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