NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208791_1027275

Scaffold Ga0208791_1027275


Overview

Basic Information
Taxon OID3300025083 Open in IMG/M
Scaffold IDGa0208791_1027275 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1103
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.205Long. (o)-77.515Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F005491Metagenome / Metatranscriptome399Y
F008022Metagenome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0208791_10272751F004523N/ADRQRKNGTTVYELPISQVWQTLDPKPLRFATYTTGYVRNISESNSSCYQINKTRKVSTRTSGYAYDTVERIMIPHWEDRIIYLAKFIIKNYYQKTTYIMNDYVMKCLKEAYYEQNKTGLPFDEDDKFFCSTDDVQVIVNGHRYNLS
Ga0208791_10272752F005491N/AMSAFYKDTRFNGKLVRLEDVIDEIYDRALETIDESLYELLNDKDDDEFYEDYKEAFPLIVEKLQKFHDGED
Ga0208791_10272753F008022N/AMTTTELQAKIEALQAALETKAQEQNAYRGQIDTLKKQLADLNKPKLTMKQFDELTTFVECGIEEFDFDDLDNYSIDYGIDYDNRITCESFCFDNVDELA
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