NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208298_1002146

Scaffold Ga0208298_1002146


Overview

Basic Information
Taxon OID3300025084 Open in IMG/M
Scaffold IDGa0208298_1002146 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6745
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F045106Metagenome / Metatranscriptome153N
F058909Metagenome / Metatranscriptome134Y
F104912Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208298_100214616F104912N/AMMTMKEVCAYVAQKRKADAIHHRKTVTQGEYCSGLTAKEYRKVKTKGKGSGSKGRTYSHTKLWNHYNEPVTTN
Ga0208298_100214617F058909N/AMKLTNREMNVLLVALDHMEEHITDLMEERTLRGDMWQERLDACESIRTKIKK
Ga0208298_100214618F045106N/AMNLKLILMKPKNVMFIEEFIEILGGDNFFLCDLIDQDQLFTMQDQLANLIANHANDGTSVARHLVPLLPRTFKVE
Ga0208298_10021469F001217N/AMSKTKFNGFEKYFIQTALKAAIEQAEVDVLAAKSNGKNVIYAPGYFTMVGNEIIDKVNDMTLKKYQD

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