NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208298_1002577

Scaffold Ga0208298_1002577


Overview

Basic Information
Taxon OID3300025084 Open in IMG/M
Scaffold IDGa0208298_1002577 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5980
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042374Metagenome158Y
F059457Metagenome134Y
F091013Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0208298_10025772F059457GGAMGGKLMNKLPKIGNTELYTARVLNMSVAQYYGIVKEYSEILNQAREINKEQLDKDKEKAELNLIYGIRYNLNKLVLEKLKGGK
Ga0208298_10025773F042374GGAGMYKKISIIFVLISMGGCSTMPIVDSRGKSSANIKGDMNRFHDDYFTCKSLVEDQTSAGWNIGKTIYNNLRWKVLWLSPKLDTRTDFVNRCLEGRGYNVINK
Ga0208298_10025776F091013N/AMTIKNEINLNSFVIHCKETKYYNVNIKARNYEEAEKRWKNIAKRRDYLTLHNELEVISISEE
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Institute for Fundamental Biomedical Research
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