NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208298_1003816

Scaffold Ga0208298_1003816


Overview

Basic Information
Taxon OID3300025084 Open in IMG/M
Scaffold IDGa0208298_1003816 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4558
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064230Metagenome129Y
F093736Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208298_100381611F093736AGGMLTTGIGYSVAKTKAQLNRQVRQEALRDQLSQQGHEQYISEIISNLSDPEMEYDSLWVQRLKAAADLRLKLMAKYIPDLKSQELTGPDGGDLVIQVQRKRFDGED
Ga0208298_10038163F064230GGAGMRSYLPQMKCTECFKIMVPQFKSEYPHKLEGWSCDCGNSEKAILRERQYTREDDGNNQQWASGQGI

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