NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208792_1043262

Scaffold Ga0208792_1043262


Overview

Basic Information
Taxon OID3300025085 Open in IMG/M
Scaffold IDGa0208792_1043262 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016056Metagenome / Metatranscriptome250Y
F061767Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0208792_10432622F061767AGGAGMKSLYPMADIMTLMTKIEGNITKLGVIYTTEEERNAIDEGLIDQFVVTAGQLTTAANALKAITYTGD
Ga0208792_10432623F016056AGGAGMAITDPEAIKFVNEYIRPMCENVRASNARGADFAIKWAGISGDFPNDPAEIVEDGRDAEGVSRLSGADIQAVAAVFDALLGDLDMTAQAII

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