NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1000147

Scaffold Ga0208157_1000147


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1000147 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45318
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (74.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019558Metagenome / Metatranscriptome229Y
F034349Metagenome175Y
F066156Metagenome127Y
F067206Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100014722F034349AGGAMANLQIQNITTLEDQGKALAEEWETITKGDKRRFNKSTKADGFDTRLGKLMVELRAEVNGGKITSQRLREVHLHLVDKRRRSEAEWFINNEVDARKFVAKSKKGFTSLTALQRAMKPSKPKAEDTEGTNSEAEVKSNVGPTEKPTVTVTKELVFDKLVAVCKANNIDLLDIAEMLMEVDTVSEAEAEETKVAA
Ga0208157_100014729F067206N/AMDLNMDNLIEIDFNYIYVTHNGVKVSIAQHRDPDPLATKFQEVGIGEPNAFMPIIRYGSTLTELIDALQEAQSRIDYKVYKGDLWHDECETEI
Ga0208157_100014736F019558GAGGMAVMAYEVTLEIDGTNSIVTLDDTYPAVRDWKTATEFAIHLALHDHPDAIVDFVDCAEYEHEEYTKWGYIHEAPLTLQ
Ga0208157_10001479F066156N/AMWVLVWLQLTSGMPLDYFQLGVYDTRKMCELQKEKAQVMIIHNGISVQCIGIDNGETE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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