NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1000615

Scaffold Ga0208157_1000615


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1000615 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18477
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (15.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F001802Metagenome / Metatranscriptome632Y
F004773Metagenome / Metatranscriptome424Y
F015994Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100061519F015994N/AMFKVKEKDLFEKNMSSYELHQMWVKMKEKRETNKWFNELEKKYNEEQENKYY
Ga0208157_100061520F000126N/AMRNYSITRKEGEWYNTQVTDSYGNKYQNYFESAHECSEWIYYIWSKEEWFNSVNSQELLYSAIEECKQIDESNNLNKIM
Ga0208157_100061524F001802N/AMQTMKHLKNDYLQLGNLIYRPYTVCELPANFGCINFGEKEGISQWFNYKGYTYLLDKIAK
Ga0208157_100061527F004773N/AMSETKEMLEATVKGLQDKIGQLNMDLKGKQQELEDAGKPVISSEVMDTINDAINEALENYNFDNTDQYDLDFSLDYEGRVQAETINLTDTYELMEAIVTKVEKQFKIEDDNSQVNTQTVVEKII
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