Scaffold Ga0208157

Basic Information
Taxon OID	3300025086 Open in IMG/M
Scaffold ID	Ga0208157_1004703 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025086 Open in IMG/M

Scaffold ID

Ga0208157_1004703 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5051
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (5.56%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

5051

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (5.56%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (11.11%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	90
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025275	Metagenome	202	Y
F025729	Metagenome / Metatranscriptome	200	Y
F027835	Metagenome / Metatranscriptome	193	N
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y
F048249	Metagenome	148	N
F069998	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100470310	F025729	N/A	MTDEIIARLEFFEETYAGEIETWVDPVTKTYYHVPIEIVRDFDNIEKL
Ga0208157_100470312	F020115	N/A	MMNNMMTYEQFEVLRKWADRVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL
Ga0208157_100470314	F069998	N/A	MKLGKIKEHMTKKELIDLMAGYPDDASVVIEVHDTSLHEDLYDFTFDAISWNRFDNTTSNPMDAFDYKEMHELRLTAINHNEK
Ga0208157_100470315	F009699	N/A	MITEDLNLQEMMTDKEAQAFMQKVDSSAPFWVELHDEDAPTMQIQGNTVPRCLYNLMVTKRDVNLYLHGLKPHRGWKIGDVKAYFGIKGGKQKVADAINAIHSELIGRFKEQNDEKTTD
Ga0208157_100470316	F032639	N/A	LDDLKSRMMKKQLINEDGFYAGSELKWGMDDVRNVLERFGRATTTSKEDVERILIAAFQDNYRLMETIDEAIGDTIVYMIEEGQLKTDEQ
Ga0208157_100470317	F029600	N/A	MKYWNGEGQYQDLFDKHWKNLVPVLGEADTPEGNVIRAIARINHDVFNNGACNIVRQTEEIDDYGDYYTEYEIERWWEDFFEEISEFARLDADRLKRKIIYSVQHDTDNGLSDMLDDYIDHIVLKVDNQLVTK
Ga0208157_100470318	F025275	N/A	MKYYALLHAVCGLAEGYSDTTVRWFNDLDKALEAKGKLVATLMDDDNAESCTTSTDGTESVINYDIEECEHEIVKIIELKPTWPESKDIREYLVWDQMNCEAPFDGDYMPTDMAVIKDLCERQEAVADTFDVEAFHEFVRDIWYGNTAMFDADDLCIYYFKLPKEFKS
Ga0208157_10047034	F027835	N/A	MKTQQHIDALYERRKTAGGFESALIDAYMKADGGNAKLLEDAFKGSRFDLTPKPKYNHGVEVLRNAAYWSGNRDEYLNDNKTAYQIIDEYLQECEALDKIVNE
Ga0208157_10047037	F048249	GAG	MKTTSKQSDEMKTSIFNTRIIRKGSKVLYRGSWGRDAQTIAEVIAIEQTDGPNEKYGDEVDAVGLDEHYVLTLNNGHWCYSYQVDGLVQLPENQSVAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208157_1004703

Overview

Ecosystem & Geography

Associated Families

Sequences