NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1004928

Scaffold Ga0208157_1004928


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1004928 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4897
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015078Metagenome257Y
F052544Metagenome / Metatranscriptome142Y
F057293Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100492813F052544N/AMSIQEKLQRLDYLSSLPYLDHTPKDWDEELRLECELDHLNQLDQ
Ga0208157_100492814F057293N/AMRKHTITVYTNDEYSLYDILNEVRSEIDRKVFDRTNIRQRKFSGSHEIEKSTDSPTWKYYGHYETVASWESNVVPDSEFIQFQKEKN
Ga0208157_10049286F015078N/AMGQGVNYWACEVTIGNIEEEKDEDGNIWFKNDQEYECEGCCSWLKDLTLDSPIKIEDCEDDKHEFKVQDVLTTIEKIISGKTDLNNDDCNSVFEAFKDNDLSLIDASVADSILQIMTYNTLVYG
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