NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1007991

Scaffold Ga0208157_1007991


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1007991 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3641
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005105Metagenome / Metatranscriptome412Y
F012166Metagenome283Y
F098224Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_10079911F098224GGAGVNIIRKKCREADLLAARFYKLAGADRERAARDWYNKIKEAANMVKLYTSGAQKCRKKSTSNKDYLRF
Ga0208157_100799110F012166GAGMAELANSGIFLERKLTPEQKLWKAVLSQGVYEACSKKAQALPLTFGEMRSALEWVDLSNGDFIQVCIYAGYDPAYIFRKAKGKVNAKNM
Ga0208157_10079919F005105AGGMRKICNACLGNGYRRIYKDTSEEEKIVIQCAACESSGEIEDEDFSYDYSGLDLNKLQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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